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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1358912_1359682_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1358912 - 1359682
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
AATTATTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
LWKDYPHSRMLFQVKFFYIC
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.1
0.43
1
66.8
43.8
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042221
1355141 - 1367382
12242
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642