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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13590348_13604281_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13590348 - 13604281
Intron Length:
13934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTACTGACTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
65
40.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
34.3
-1.8
3.2
40.1
40
Minor BPS
49.4
-0
1.9
64.96
41.7

Associated Gene:

Gene:
ZNF217
Ensembl Gene ID:
ENSAPLG00000006344
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006569
13590117 - 13614496
24380