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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1359742_1359832_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1359742 - 1359832
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
AGGTCCTTAAAT
Flanking Amino Acid:
FVWGASILNAEEFTVNPTLL
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
85.3
0.79
0.6
84.7
23.2
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
73.4
0.81
1.4
80.92
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042221
1355141 - 1367382
12242
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642