About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1359950_1360362_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1359950 - 1360362
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TAGAAATTAAAT
Flanking Amino Acid:
HAVIQDYILDKINRRLHLSK
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
47.8
-0
1.9
66.19
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042221
1355141 - 1367382
12242
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642