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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13601898_13604281_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13601898 - 13604281
Intron Length:
2384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTACTGACTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
49.4
-0
1.9
64.96
41.7

Associated Gene:

Gene:
ZNF217
Ensembl Gene ID:
ENSAPLG00000006344
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042656
13601805 - 13616275
14471
ENSAPLT00000020568
13601805 - 13616275
14471