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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1360482_1361986_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1360482 - 1361986
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTTCAAAGAAT
Flanking Amino Acid:
TVQYNVTYTIDDKSEHVNFY
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
88.6
0.87
0.8
80.8
36.8
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
43.1
-0.4
2.2
66.49
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642
ENSAPLT00000042221
1355141 - 1367382
12242