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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13606072_13608218_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13606072 - 13608218
Intron Length:
2147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTAAT
U12 Branch Point Sequence:
CTCTTCGTAATA
Flanking Amino Acid:
EDGLPETLNLDKNEDGLERA
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
71.8
0.54
1.2
71.9
41
Major PPT
74
0.54
1
75.4
27.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
53.9
0.12
2
65.77
41.9

Associated Gene:

Gene:
ZNF217
Ensembl Gene ID:
ENSAPLG00000006344
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027457
13604282 - 13616275
11994
ENSAPLT00000020568
13601805 - 13616275
14471
ENSAPLT00000006569
13590117 - 13614496
24380