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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13610766_13615786_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13610766 - 13615786
Intron Length:
5021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTAT
5'SS Class:
major
3'SS Sequence:
TGATTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
NGQVTSSTIEGLKDTSACSM
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
66.7
41.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.7
0.53
1
66
45.1
Minor 5ss
42.9
-0.8
3.5
64.2
47.3
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
ZNF217
Ensembl Gene ID:
ENSAPLG00000006344
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027457
13604282 - 13616275
11994