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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1362048_1367262_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1362048 - 1367262
Intron Length:
5215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGGGC
5'SS Class:
major
3'SS Sequence:
TTCAAAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTTTCAAAATT
Flanking Amino Acid:
VGILLGLMFEVTAKYVIIFI
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58
40.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
70.2
0.45
1
59.5
44.8
Minor 5ss
27.8
-2.5
3.7
41.2
45.5
Minor BPS
53.8
0.2
1.9
75.84
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009728
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019580
1353900 - 1367382
13483
ENSAPLT00000010124
1354741 - 1367382
12642
ENSAPLT00000042221
1355141 - 1367382
12242