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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13635063_13714511_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
13635063 - 13714511
Intron Length:
79449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
CACTAGTTACTC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.4
41.9
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
82.7
0.74
0.8
76.6
32
Minor 5ss
49.1
-0.1
2.5
65.5
45.8
Minor BPS
40.9
-0.7
2.3
47.57
42.5

Associated Gene:

Gene:
TSHZ2
Ensembl Gene ID:
ENSAPLG00000011554
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045907
13634643 - 13854646
220004