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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1369456_1370115_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1369456 - 1370115
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGAAATTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.8
0.67
0.9
73.7
40.9
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
47.4
-0.3
1.8
53.01
41.5

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038025
1369247 - 1444915
75669