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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13717591_13846188_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13717591 - 13846188
Intron Length:
128598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTCG
5'SS Class:
major
3'SS Sequence:
CATTACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATATAT
Flanking Amino Acid:
VLKKHNLILAGYVQEEDLKE
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.8
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.3
0.57
0.9
70.8
39.1
Minor 5ss
46.7
-0.3
2.4
55.7
43.9
Minor BPS
50.6
0.1
1.9
75.34
40.8

Associated Gene:

Gene:
TSHZ2
Ensembl Gene ID:
ENSAPLG00000011554
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012017
13714512 - 13846291
131780