About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13717591_13854606_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13717591 - 13854606
Intron Length:
137016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CATTACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATATAT
Flanking Amino Acid:
RKQQAPKRAAGYVQEEDLKE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.3
0.57
0.9
70.8
39.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
50.6
0.1
1.9
75.34
40.8

Associated Gene:

Gene:
TSHZ2
Ensembl Gene ID:
ENSAPLG00000011554
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045907
13634643 - 13854646
220004