About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1380688_1399084_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1380688 - 1399084
Intron Length:
18397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TTGACTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACTTTTTTGACT
Flanking Amino Acid:
RLGVIEPVQCRLAEEEIKAE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.1
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.7
0.6
0.9
70.2
36.2
Minor 5ss
45.6
-0.5
2.8
61.2
43.3
Minor BPS
71.2
0.75
1.1
80.21
36

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026784
1379766 - 1440431
60666
ENSAPLT00000018048
1379766 - 1444915
65150
ENSAPLT00000017537
1379766 - 1444915
65150