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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13863539_13864343_F

Intron Information:

Intron Rank:
144271
Intron Class:
major
Intron Phase:
Intron Coordinates:
13863539 - 13864343
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTAAATCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73
0.52
1
65.1
40.7
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
64.8
0.45
1.6
73.1
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027789
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037843
13863393 - 14027898
164506
ENSAPLT00000033174
13863393 - 13973352
109960
ENSAPLT00000042702
13863393 - 13960772
97380
ENSAPLT00000029770
13863393 - 13978984
115592
ENSAPLT00000042363
13863393 - 14008626
145234
ENSAPLT00000017330
13863393 - 13956892
93500
ENSAPLT00000039637
13863393 - 13886901
23509