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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1388212_1399084_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1388212 - 1399084
Intron Length:
10873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGACTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACTTTTTTGACT
Flanking Amino Acid:
MHPQSLAEEEIKAE
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.7
0.6
0.9
70.2
36.2
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
71.2
0.75
1.1
80.21
36

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009976
1388198 - 1444915
56718