About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13947946_13954335_F

Intron Information:

Intron Rank:
144273
Intron Class:
major
Intron Phase:
Intron Coordinates:
13947946 - 13954335
Intron Length:
6390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTTTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71.6
40.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79
0.65
0.8
79.5
33.2
Minor 5ss
32.2
-2
3.4
46.9
48.4
Minor BPS
63.8
0.43
1.6
73.42
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027789
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033174
13863393 - 13973352
109960
ENSAPLT00000029770
13863393 - 13978984
115592
ENSAPLT00000042702
13863393 - 13960772
97380
ENSAPLT00000017330
13863393 - 13956892
93500
ENSAPLT00000042363
13863393 - 14008626
145234
ENSAPLT00000037843
13863393 - 14027898
164506