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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_13954487_13956261_F

Intron Information:

Intron Rank:
144274
Intron Class:
major
Intron Phase:
Intron Coordinates:
13954487 - 13956261
Intron Length:
1775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTCATTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
75.3
40.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.7
0.49
0.9
65.6
40.7
Minor 5ss
39.3
-1.2
2.7
48.5
40.3
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027789
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017330
13863393 - 13956892
93500