About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1399156_1411448_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1399156 - 1411448
Intron Length:
12293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTATCTGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TACTCCTTAAGA
Flanking Amino Acid:
EGMDISTRSKDPGSVERTAQ
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
76.2
0.65
1
67
39.8
Major PPT
71.4
0.48
1
65.1
41
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
72.1
0.69
1.6
76.39
40.8

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018048
1379766 - 1444915
65150
ENSAPLT00000017537
1379766 - 1444915
65150
ENSAPLT00000038025
1369247 - 1444915
75669
ENSAPLT00000009976
1388198 - 1444915
56718
ENSAPLT00000028328
1388393 - 1444849
56457
ENSAPLT00000026784
1379766 - 1440431
60666