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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14060176_14072234_F

Intron Information:

Intron Rank:
149744
Intron Class:
major
Intron Phase:
Intron Coordinates:
14060176 - 14072234
Intron Length:
12059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTTACAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85
0.79
0.7
83.7
24.4
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
49
-0
1.7
63.75
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030566
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019793
14059715 - 14080074
20360