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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14078245_14079696_F

Intron Information:

Intron Rank:
149746
Intron Class:
major
Intron Phase:
Intron Coordinates:
14078245 - 14079696
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
GTAACCATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
67.1
0.42
1
59
37.9
Major PPT
78.7
0.65
0.8
69.6
36.8
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
47.5
-0.1
2
67.65
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030566
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019793
14059715 - 14080074
20360