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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14089737_14092107_F

Intron Information:

Intron Rank:
147383
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
14089737 - 14092107
Intron Length:
2371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTGTGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGTCCTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.3
39.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
50.5
0.01
1.2
51.9
41.9
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
49.7
0.06
2.1
74.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029379
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040832
14089636 - 14094943
5308