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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14094330_14099625_F

Intron Information:

Intron Rank:
147382
Intron Class:
major
Intron Phase:
Intron Coordinates:
14094330 - 14099625
Intron Length:
5296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAAAT
5'SS Class:
major
3'SS Sequence:
TATATTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GAATTTTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
71.8
39.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.6
0.64
0.9
72.9
37
Minor 5ss
39.6
-1.2
3.2
57.7
46.5
Minor BPS
53.7
0.11
1.3
58.69
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029379
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037239
14093273 - 14099674
6402