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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1411545_1458365_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1411545 - 1458365
Intron Length:
46821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTCTTTTTTATA
Flanking Amino Acid:
GVEEEQGAKKDLLMHLVVSD
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
90.6
0.91
0.6
87.5
23
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
59.5
0.29
1.6
69.68
37.1

Associated Gene:

Gene:
EYA2
Ensembl Gene ID:
ENSAPLG00000009249
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030131
1411509 - 1518739
107231
ENSAPLT00000025284
1411509 - 1518739
107231
ENSAPLT00000021341
1411509 - 1552764
141256
ENSAPLT00000044559
1411509 - 1518739
107231