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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14127501_14128809_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14127501 - 14128809
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGCAG
5'SS Class:
major
3'SS Sequence:
TTTATGTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCAAACTGAACT
Flanking Amino Acid:
TITSETQTITVSAPEFVFEH
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
53.1
45.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.8
0.56
1
73.6
41.7
Minor 5ss
41.7
-0.9
3.2
55.3
48.9
Minor BPS
55.5
0.25
1.7
72.08
43.9

Associated Gene:

Gene:
ZFP64
Ensembl Gene ID:
ENSAPLG00000006423
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006663
14126839 - 14136327
9489