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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14130248_14130863_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14130248 - 14130863
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCATA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
DMERHLRTHTGDKPHKCDVC
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
71.8
39.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
45.4
-0.5
2.5
58
46.3
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
ZFP64
Ensembl Gene ID:
ENSAPLG00000006423
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006663
14126839 - 14136327
9489