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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14131116_14135026_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14131116 - 14135026
Intron Length:
3911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCATCTCTAATT
Flanking Amino Acid:
QLTVHLRSHTGDAPFQCQMC
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
82.7
0.73
1
79.9
37.7
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
62.9
0.48
1.7
77.17
39.8

Associated Gene:

Gene:
ZFP64
Ensembl Gene ID:
ENSAPLG00000006423
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006663
14126839 - 14136327
9489