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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1415280_1416162_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1415280 - 1416162
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTAATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTAATCTTAATT
Flanking Amino Acid:
EGDWFCPECEKITVAECIET
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.2
0.68
0.8
78
35.1
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
69.7
0.7
1.2
78.21
37.9

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017537
1379766 - 1444915
65150
ENSAPLT00000038025
1369247 - 1444915
75669
ENSAPLT00000009976
1388198 - 1444915
56718
ENSAPLT00000028328
1388393 - 1444849
56457
ENSAPLT00000026784
1379766 - 1440431
60666
ENSAPLT00000018048
1379766 - 1444915
65150