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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14157737_14201445_F

Intron Information:

Intron Rank:
128552
Intron Class:
major
Intron Phase:
Intron Coordinates:
14157737 - 14201445
Intron Length:
43709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTCCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.5
0.71
0.8
73.9
35.7
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
60.3
0.41
1.7
77.88
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019243
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032158
14157346 - 14204569
47224