Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1417646_1418805_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1417646 - 1418805

Intron Length:

1160

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTATG

5'SS Class:

major

3'SS Sequence:

TTTTTATTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTTTTTATTT

Flanking Amino Acid:

HPMDLCTLEKNVKKKMYGCT

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

75.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

92.6

0.96

0.7

85.4

34.1

Minor 5ss

41.8

-0.9

2.5

51.4

45.2

Minor BPS

0.58

1.5

81.3

34.9

Associated Gene:

Gene:

ZMYND8

Ensembl Gene ID:

ENSAPLG00000009509

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018048

1379766 - 1444915

65150

ENSAPLT00000017537

1379766 - 1444915

65150

ENSAPLT00000038025

1369247 - 1444915

75669

ENSAPLT00000009976

1388198 - 1444915

56718

ENSAPLT00000028328

1388393 - 1444849

56457

ENSAPLT00000026784

1379766 - 1440431

60666