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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1419516_1420670_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1419516 - 1420670
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TACTAAATAACC
Flanking Amino Acid:
KVIIKICEHEMNEIEVCPEC
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
47.9
-0.1
2
63.25
41.3

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026784
1379766 - 1440431
60666
ENSAPLT00000018048
1379766 - 1444915
65150
ENSAPLT00000017537
1379766 - 1444915
65150
ENSAPLT00000038025
1369247 - 1444915
75669
ENSAPLT00000009976
1388198 - 1444915
56718
ENSAPLT00000028328
1388393 - 1444849
56457