Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14201511_14203563_F

Intron Information:

Intron Rank:

128553

Intron Class:

major

Intron Phase:

Intron Coordinates:

14201511 - 14203563

Intron Length:

2053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAAAAT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTTCGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAG

U12 Branch Point Sequence:

TTAGGCTTATCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

0.9

79.2

28.8

Major BPS

64.3

0.36

1.6

41.2

Major PPT

0.59

73.2

37.2

Minor 5ss

-2.4

39.4

46.1

Minor BPS

50.8

0.02

2.1

67.86

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019243

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032158

14157346 - 14204569

47224