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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1420749_1421138_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1420749 - 1421138
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
CCTCTTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTGTTTTACCT
Flanking Amino Acid:
KRENWFCEPCSNPHPLVWAK
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.2
34
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.3
0.61
0.7
69.6
31.2
Minor 5ss
41.5
-0.9
2.8
49.9
46.4
Minor BPS
57.7
0.32
1.7
75.46
41.9

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017537
1379766 - 1444915
65150
ENSAPLT00000038025
1369247 - 1444915
75669
ENSAPLT00000009976
1388198 - 1444915
56718
ENSAPLT00000028328
1388393 - 1444849
56457
ENSAPLT00000026784
1379766 - 1440431
60666
ENSAPLT00000018048
1379766 - 1444915
65150