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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14214892_14216326_F

Intron Information:

Intron Rank:
132620
Intron Class:
major
Intron Phase:
Intron Coordinates:
14214892 - 14216326
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGGAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
66.9
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.3
0.86
0.7
81.3
30.7
Minor 5ss
33.3
-1.9
3.5
46.7
48.8
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021257
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027682
14213589 - 14216420
2832