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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14228646_14230923_F

Intron Information:

Intron Rank:
142109
Intron Class:
major
Intron Phase:
Intron Coordinates:
14228646 - 14230923
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TTTCATTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.76
0.8
76.7
37.1
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
51.2
0.12
1.7
72.22
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026514
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043268
14228640 - 14233400
4761