About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14246018_14248740_R

Intron Information:

Intron Rank:
144968
Intron Class:
major
Intron Phase:
Intron Coordinates:
14246018 - 14248740
Intron Length:
2723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
GTCCCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GTCCCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.6
0.71
0.8
75.3
33.2
Minor 5ss
48.3
-0.2
2.3
59
39.8
Minor BPS
57.1
0.22
1.6
65.5
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025375
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033352
14244451 - 14248970
4520