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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1425288_1431239_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1425288 - 1431239
Intron Length:
5952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTTTGATC
Flanking Amino Acid:
TPGSILNLNLDRSKAEMDLK
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
75.6
39.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
36.7
-1.5
3
49.2
40.8
Minor BPS
80.6
0.94
0.9
85.22
26.2

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009976
1388198 - 1444915
56718
ENSAPLT00000028328
1388393 - 1444849
56457
ENSAPLT00000026784
1379766 - 1440431
60666
ENSAPLT00000018048
1379766 - 1444915
65150
ENSAPLT00000017537
1379766 - 1444915
65150
ENSAPLT00000038025
1369247 - 1444915
75669