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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14304747_14305353_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14304747 - 14305353
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATGTCTCAATT
Flanking Amino Acid:
VMNTSNPRSKIGLFDLEVNC
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.9
36.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.1
0.74
0.7
81.8
29.8
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
56.6
0.29
1.6
71.35
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029064
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037459
14286756 - 14308024
21269