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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14304747_14309571_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14304747 - 14309571
Intron Length:
4825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAACT
Flanking Amino Acid:
VMNTSNPRSKFLFCALIFTT
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.9
36.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.2
0.54
0.9
68.3
37.6
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
65
0.55
1.4
76.98
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029064
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019468
14286720 - 14309655
22936