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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14305515_14306264_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14305515 - 14306264
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTGCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTTCCCATTC
Flanking Amino Acid:
LLLFSNIIPISLRVNLDMGK
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74.1
38.4
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
68.2
0.41
0.9
64
31.2
Minor 5ss
28.1
-2.5
2.7
32.6
42
Minor BPS
47.3
-0.2
2
66.86
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029064
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037459
14286756 - 14308024
21269