About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14317492_14318572_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14317492 - 14318572
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATCT
Flanking Amino Acid:
YFVLSSWWAKALFVFCGLIT
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.3
0.66
0.8
73.3
31.6
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
75.8
0.89
1.5
90.23
33.7

Associated Gene:

Gene:
DNAJC5
Ensembl Gene ID:
ENSAPLG00000030676
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036103
14315740 - 14324529
8790