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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14318787_14320743_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14318787 - 14320743
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATTTTTTAATC
Flanking Amino Acid:
ATSDDIKKSYRKLALKYHPD
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
69.7
0.6
1.2
70.36
35.6

Associated Gene:

Gene:
DNAJC5
Ensembl Gene ID:
ENSAPLG00000030676
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036103
14315740 - 14324529
8790