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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14377585_14379328_F

Intron Information:

Intron Rank:
145027
Intron Class:
major
Intron Phase:
Intron Coordinates:
14377585 - 14379328
Intron Length:
1744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTGTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.7
0.69
0.7
76.9
30.3
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
65.6
0.47
1.6
73.85
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028221
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044076
14376833 - 14384323
7491