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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14381399_14383333_F

Intron Information:

Intron Rank:
145029
Intron Class:
major
Intron Phase:
Intron Coordinates:
14381399 - 14383333
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGTGTTTG
5'SS Class:
major
3'SS Sequence:
CATTCTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTATTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.5
40.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.9
0.6
0.8
74.5
34.6
Minor 5ss
44
-0.7
2.7
49
47.2
Minor BPS
58.5
0.35
1.8
78.29
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028221
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044076
14376833 - 14384323
7491