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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1440080_1440416_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1440080 - 1440416
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGGAC
U12 Branch Point Sequence:
GGGGACTGGACC
Flanking Amino Acid:
SSDKSKESVTDPSV*
Intron Amino Acid Position:
1184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
46.1
-0.2
1.3
42.7
39.5
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
44.4
-0.4
1.8
49.07
40.8

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026784
1379766 - 1440431
60666