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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14408198_14409302_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14408198 - 14409302
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTACCTTAACC
Flanking Amino Acid:
AKGEMPASTQAAYDGFLALW
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
38.3
-1.3
3
48.3
47.4
Minor BPS
81.1
0.96
1.2
83.4
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019397
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041063
14402325 - 14409995
7671