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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14409355_14409441_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14409355 - 14409441
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
GAGACAGTGATT
Flanking Amino Acid:
ALWQFNNSDTDPCFLRSEDM
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
82.1
0.72
0.9
73.6
41.2
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
41.2
-0.6
2.2
54.41
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019397
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041063
14402325 - 14409995
7671