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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1441621_1444747_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1441621 - 1444747
Intron Length:
3127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTAATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGGTTTTAATT
Flanking Amino Acid:
TYIPTTQPTITIPVVVSPSA
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.6
0.73
0.8
76.9
36
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
67.5
0.63
1.3
78.42
39.1

Associated Gene:

Gene:
ZMYND8
Ensembl Gene ID:
ENSAPLG00000009509
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038025
1369247 - 1444915
75669
ENSAPLT00000017537
1379766 - 1444915
65150
ENSAPLT00000009976
1388198 - 1444915
56718