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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14449228_14450023_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14449228 - 14450023
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GTCTCACGAACT
Flanking Amino Acid:
LAQMGYEFGKGLGKNSEGRV
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
48.5
-0
2.1
72.17
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014707
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015331
14446677 - 14453733
7057