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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_14450156_14451173_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14450156 - 14451173
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACTT
Flanking Amino Acid:
DSVDDSGYAKVIDSGGPENG
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.5
0.55
0.9
68.2
37.6
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
50.8
0.1
1.8
71.95
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014707
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015331
14446677 - 14453733
7057